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Are Bio-ontologies Metaphysical Theories?

Lean, Oliver M (2021) Are Bio-ontologies Metaphysical Theories? [Preprint]

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Abstract

Bio-ontologies are digital frameworks for handling biological and biomedical data. They consist of theoretical entities and relations with explicitly defined logical structures and precise definitions, whose purpose is to provide a shared language for representing information to be distributed and integrated across diverse scientific contexts. It is tempting to view bio-ontologies as clear and formal expressions of a scientific community’s ontological commitments about their domain of inquiry, and to view their integration as tantamount to the metaphysical unification of science that some philosophers have envisaged. However, I argue that the local, practical, social and technological factors that influence their design prevent us from straightforwardly reading metaphysical conclusions from them. I discuss these complications and suggest how they can be overcome, revealing more general lessons for the development of a well-founded scientific metaphysics.


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Item Type: Preprint
Creators:
CreatorsEmailORCID
Lean, Oliver Momlean@gmail.com
Keywords: Philosophy of Biology; scientific metaphysics; ontology; bioinformatics; data; datacentric biology; scientific pluralism; data integration
Subjects: General Issues > Data
General Issues > Scientific Metaphysics
Specific Sciences > Biology
Specific Sciences > Computation/Information
Depositing User: Dr. Oliver Lean
Date Deposited: 06 Jul 2021 02:08
Last Modified: 06 Jul 2021 02:08
Item ID: 19281
Subjects: General Issues > Data
General Issues > Scientific Metaphysics
Specific Sciences > Biology
Specific Sciences > Computation/Information
Date: 2021
URI: https://philsci-archive.pitt.edu/id/eprint/19281

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