Scholl, Raphael (2019) Unwarranted Assumptions: Claude Bernard and the growth of the vera causa standard. [Preprint]

Scholl, Raphael (2018) Scenes from a Marriage: On the confrontation model of history and philosophy of science. [Preprint]

Novick, Aaron and Scholl, Raphael (2017) Presume It Not: True Causes in the Search for the Basis of Heredity. [Preprint]

Green, Sara and Serban, Maria and Scholl, Raphael and Jones, Nicholaos and Brigandt, Ingo and Bechtel, William (2016) Network Analyses in Systems Biology: New Strategies for Dealing with Biological Complexity. [Preprint]

Scholl, Raphael (2016) Spot the difference: Causal contrasts in scientific diagrams. [Preprint]

Scholl, Raphael and Räz, Tim (2016) Towards a methodology for integrated history and philosophy of science. The philosophy of historical case studies.

Scholl, Raphael and Nickelsen, Kärin (2014) Discovery of causal mechanisms: Oxidative phosphorylation and the Calvin-Benson cycle. History and Philosophy of the Life Sciences.

Scholl, Raphael (2014) Inference to the Best Explanation in the Catch-22: How much autonomy for Mill’s method of difference? [Preprint]

Scholl, Raphael and Pigliucci, Massimo (2014) The proximate-ultimate distinction and evolutionary developmental biology: Causal irrelevance vs. explanatory abstraction. [Preprint]

Scholl, Raphael (2013) Causal inference, mechanisms, and the Semmelweis case. Studies in History and Philosophy of Science, 44 (1). pp. 66-76.

Scholl, Raphael (2013) Confessions of a Complexity Skeptic.

Scholl, Raphael and Räz, Tim (2013) Modeling causal structures: Volterra's struggle and Darwin's success. European Journal for Philosophy of Science, 3 (1). pp. 115-132. ISSN 1879-4912