Evans, Nicholas G. and Pence, Charles H. (2024) Gain of Function Research and Model Organisms in Biology. Journal of Medical Ethics, 50 (3). pp. 201-206. ISSN 1473-4257

Pence, Charles H. and Hicks, Daniel J. (2023) Challenges for ‘Community’ in Science and Values: Cases from Robotics Research. HUMANA.MENTE Journal of Philosophical Studies, 16 (44). pp. 1-32.

Pence, Charles H. (2023) Putting Ambiguity to Work: Biodiversity and Rules of Engagement for Vagueness in Science. [Preprint]

Pence, Charles H. (2023) Origin’s Chapter IX and X: From Old Objections to Novel Explanations: Darwin on the Fossil Record. [Preprint]

Pence, Charles H. and Rivelli, Luca (2022) Editorial Introduction to “Digital Studies of Digital Science”. [Preprint]

Pence, Charles H. (2022) Of Stirps and Chromosomes: Generality Through Detail. [Preprint]

Pence, Charles H. (2022) Testing and discovery: Responding to challenges to digital philosophy of science. [Preprint]

Pence, Charles H. (2022) Whatever Happened to Reversion? [Preprint]

Pence, Charles H. (2021) Popper and the Propensity Interpretation of Probability. [Preprint]

Pence, Charles H. (2021) W.F.R. Weldon Changes His Mind. [Preprint]

Lean, Oliver M and Rivelli, Luca and Pence, Charles H. (2021) Digital Literature Analysis for Empirical Philosophy of Science. [Preprint]

Pence, Charles H. (2020) Causal Composition in Evolutionary Theory. [Preprint]

Pence, Charles H. (2020) David Livingstone Smith's How Biology Shapes Philosophy. BJPS Review of Books.

Pence, Charles H. (2019) How Not to Fight About Theory: The Debate Between Biometry and Mendelism in Nature, 1890–1915. [Preprint]

Pence, Charles H. (2019) Locating Uncertainty in Stochastic Evolutionary Models: Divergence Time Estimation. Biology & Philosophy, 34. p. 21. ISSN 1572-8404

Pence, Charles H. and Ramsey, Grant (2018) How to do digital philosophy of science. [Preprint]

Pence, Charles H. and Swaim, Daniel G. (2017) The Economy of Nature: The Structure of Evolution in Linnaeus, Darwin, and Toward the Extended Synthesis. European Journal for Philosophy of Science, 8. pp. 435-454. ISSN 1879-4912

Pence, Charles H. (2016) Is Genetic Drift a Force? Synthese. ISSN 1573-0964

Pence, Charles H. (2015) Charles Darwin and Sir John F. W. Herschel: Nineteenth-Century Science and its Methodology. In: UNSPECIFIED.

Pence, Charles H. and Ramsey, Grant (2014) Is Organismic Fitness at the Basis of Evolutionary Theory? In: UNSPECIFIED.

Pence, Charles H. (2013) The Early History of Chance in Evolution. [Preprint]

Pence, Charles H. (2013) Putting Process and Product Conceptions of Natural Selection and Genetic Drift to the Test. [Preprint]

Ramsey, Grant and Pence, Charles H. (2013) Fitness: Philosophical Problems. eLS.

Pence, Charles H. and Ramsey, Grant (2012) A New Foundation for the Propensity Interpretation of Fitness. [Preprint]

Pence, Charles H. and Buchak, Lara (2012) Oyun: A New, Free Program for Iterated Prisoner’s Dilemma Tournaments in the Classroom. Evolution: Education and Outreach, 5 (3). pp. 467-476.

Pence, Charles H. (2011) ‘‘Describing our whole experience’’: The statistical philosophies of W. F. R. Weldon and Karl Pearson. Studies in History and Philosophy of Biological and Biomedical Sciences, 42 (4). pp. 475-485. ISSN 1369-8486

Pence, Charles H. (2011) “Describing our Whole Experience”: The Statistical Philosophy of W.F.R. Weldon. [Preprint]

Pence, Charles H. (2011) The Conflation of "Chance" in Evolution. [Preprint]

Pence, Charles H. (2011) Nietzsche’s Aesthetic Critique of Darwin. History and Philosophy of the Life Sciences, 33 (2). pp. 165-190.