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Andrews, Mel (2021) The Math is not the Territory: Navigating the Free Energy Principle. [Preprint]

Atmanspacher, Harald (2001) Determinism Is Ontic, Determinability is Epistemic. [Preprint]

Barwich, Ann-Sophie and Firestein, Stuart and Dietrich, Michael R. (2024) Wider than the Sky: An Alternative to “Mapping” the World onto the Brain. [Preprint]

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Bechtel, William and Shagrir, Oron (2014) The Non-­‐Redundant Contributions of Marr’s Three Levels of Analysis for Explaining Information Processing Mechanisms. [Preprint]

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Binder, Bernd (2024) (Split-)Quaternion and (Split-)Octonion Dynamics in Discrete-Time Recurrent Frenet Frames. [Preprint]

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Bruineberg, Jelle and Dolega, Krzysztof and Dewhurst, Joe and Baltieri, Manuel (2020) The Emperor’s New Markov Blankets. [Preprint]

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Bschir, Karim and Braunack-Mayer, Lydia (2018) Predicting under Structural Uncertainty: Why not all Hawkmoths are Ugly. [Preprint]

Callaway, H.G. (2015) Fundamental Physics, Partial Models and Time’s Arrow. [Preprint]

Charles, Rathkopf (2015) Network Representation and Complex Systems. [Preprint]

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Coelho Mollo, Dimitri (2022) Intelligent Behaviour. [Preprint]

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Colombo, Matteo and Wright, Cory (2017) First principles in the life sciences: The free-energy principle, organicism, and mechanism. [Preprint]

Coninx, Sabrina and Stilwell, Peter (2023) Chronic Pain, Enactivism, & the Challenges of Integration. [Preprint]

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Céspedes, Esteban (2021) A positivist criticism of positivist growth theory. [Preprint]

Céspedes, Esteban and Fuentes, Miguel (2019) Effective complexity: In which sense is it informative? [Preprint]

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Donhauser, Justin and Worley, Sara and Bradie, Michael and Bouzat, Juan (2019) The Problem of Mooted Models for Analyses of Microbiome Causality. [Preprint]

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Díez, José and Suárez, Javier (2023) How do networks explain? A neo-Hempelian approach to network explanations of the ecology of the microbiome. [Preprint]

Eagle, Antony (2005) Randomness is Unpredictability. [Preprint]

Earley, Joseph (2008) How Philosophy of Mind Needs Philosophy of Chemistry. [Preprint]

Ellerman, David (2016) Brain functors: A mathematical model of intentional perception and action. [Preprint]

Engelbrecht, Jüri and Tamm, Kert and Peets, Tanel (2020) Signals in nerves from the philosophical viewpoint. [Preprint]

Favela, Luis H. and Chemero, Anthony (2021) Explanatory Pluralism: A Case Study from the Life Sciences. [Preprint]

Franklin, Alexander (2021) How the Reductionist Should Respond to the Multiscale Argument, and What This Tells Us About Levels. [Preprint]

Frigg, Roman and Werndl, Charlotte (2011) Entropy - A Guide for the Perplexed. [Preprint]

Frigg, Roman and Smith, Leonard A. (2022) An ineffective antidote for hawkmoths. [Preprint]

Froese, Tom (2021) To understand the origin of life we must first understand the role of normativity. [Preprint]

Froese, Tom and Karelin, Georgii and Takashi, Ikegami (2024) Making mind matter with irruption theory: Bridging end-directedness and entropy production by satisfying the participation criterion. [Preprint]

Fuchs, Christian (2004) Science as a Self-Organizing Meta-Information System. [Preprint]

Giunti, Marco (2006) Emulation, Reduction, and Emergence in Dynamical Systems. [Preprint]

Grüne-Yanoff, Till (2007) The Explanatory Potential of Artificial Societies. [Preprint]

Helman, Daniel (2022) Finding or Creating a Living Organism? Past and Future Thought Experiments in Astrobiology Applied to Artificial Intelligence. [Preprint]

Herring, John (2021) Cooperative Equilibrium in Biosphere Evolution: Reconciling Competition and Cooperation in Evolutionary Ecology. [Preprint]

Honenberger, Phillip (2021) Natural artificiality, niche construction, and the content-open mediation of human behavior. [Preprint]

Horseman, Nelson (2024) Biological Theories in the Domain of Physiology. [Preprint]

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Jaimes Martinez, Juan Carlos / JC and Loguercio, Leandro Lopes / LL (2024) Does nature learn? Information integration and rare events in systems of increasing complexity. [Preprint]

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Kostic, Daniel and Hilgetag, Claus and Tittgemeyer, Marc (2020) Unifying the essential concepts of biological networks: biological insights and philosophical foundations. [Preprint]

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Lahiri, Avijit (2020) Inference Belief and Interpretation in Science. [Preprint]

Lam, Vincent (2021) Climate modelling and structural stability. [Preprint]

Lapin, Yair (2021) Irreversibility and Complexity. [Preprint]

Lawhead, Jon (2015) Structural Modeling Error and the System Individuation Problem. [Preprint]

Leifer, Matthew (2018) Against Fundamentalism. [Preprint]

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List, Christian and Pivato, Marcus (2019) Dynamic and stochastic systems as a framework for metaphysics and the philosophy of science. [Preprint]

Matthiessen, Dana (2017) Causal Concepts Guiding Model Specification in Systems Biology. [Preprint]

Matthiessen, Dana (2017) Mechanistic Explanation in Systems Biology: Cellular Networks. [Preprint]

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Navas, Alejandro and Nabergall, Lukas and Winsberg, Eric (2017) An Antidote for Hawkmoths: On the prevalence of structural chaos in non-linear modeling. [Preprint]

Northcott, Robert (2019) Big data and prediction: four case studies. [Preprint]

O'Loughlin, Ryan (2023) Diagnosing errors in climate model intercomparisons. [Preprint]

Ortmann, Jakob and Veit, Walter (2022) Theory Roulette: Choosing that Climate Change is not a Tragedy of the Commons. [Preprint]

Pedroso, Makmiller (2022) Betting Blind: Coping with Uncertainty through Redundancy. [Preprint]

Pedroso, Makmiller (2019) Blind Cooperation:The Evolution of Redundancy via Ignorance. [Preprint]

Pedroso, Makmiller (2023) The costs of too much cooperation. [Preprint]

Perović, Slobodan (2019) The Complexity-based Explanatory Strategy, Biological Levels, and the Origin of Life. [Preprint]

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Rubin, Hannah (2021) Structural Causes of Citation Gaps. [Preprint]

Sander Oest, Sebastian (2024) Life–Mind Continuity: Untangling Categorical, Extensional, and Systematic Aspects. [Preprint]

Saunders, Daniel (2022) When is Similarity-biased Social Learning Adaptive? [Preprint]

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Scorzato, Luigi (2024) Reliability and Interpretability in Science and Deep Learning. [Preprint]

Sims, Matthew (2021) A Continuum of Intentionality: linking biogenic and anthropogenic approaches to cognition. [Preprint]

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Veit, Walter (2022) Confidence Levels or Degrees of Sentience? [Preprint]

Veit, Walter (2021) Consciousness, Complexity, and Evolution. [Preprint]

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Veit, Walter (2021) Dennett and Spinoza. [Preprint]

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Veit, Walter (2021) Scaffolding Natural Selection. [Preprint]

Veit, Walter (2022) Towards a Comparative Study of Animal Consciousness. [Preprint]

Veit, Walter and Browning, Heather (2023) Defending Sentientism. [Preprint]

Veit, Walter and Browning, Heather (2022) Life, Mind, Agency: Why Markov Blankets Fail the Test of Evolution. [Preprint]

Veit, Walter and Browning, Heather (2022) Pathological Complexity and the Evolution of Sex Differences. [Preprint]

Veit, Walter and Browning, Heather (2022) Polygenic Scores and Social Science. [Preprint]

Veit, Walter and Browning, Heather (2022) Social Robots and the Intentional Stance. [Preprint]

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Wallace, Rodrick (2008) Lurching Toward Chernobyl: Dysfunctions of Real-Time Computation. [Preprint]

Walsh, Elena (2020) Pathological prediction: A top-down cause of organic disease. [Preprint]

Weinberger, Naftali (2023) Homeostasis and the Faithless Foundations of Causal Inference. [Preprint]

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Werndl, Charlotte (2015) Determinism and Indeterminism. [Preprint]

Werndl, Charlotte (2009) Justifying Definitions in Mathematics—Going Beyond Lakatos. [Preprint]

Werndl, Charlotte (2008) What Are the New Implications of Chaos for Unpredictability? [Preprint]

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Conference or Workshop Item

Abrams, Marshall (2022) Random foraging and perceived randomness. In: UNSPECIFIED.

Andersson, Claes (2009) Inverse Ontomimetic Simulation: a window on complex systems. In: UNSPECIFIED.

BEN AMOR, Soufian and LAVALLEE, Ivan and BUI, Marc (2006) Percolation, Pretopology and Complex Systems Modeling. In: UNSPECIFIED. (In Press)

Boyer-Kassem, Thomas and Imbert, Cyrille (2018) Explaining Scientific Collaboration: a General Functional Account. In: UNSPECIFIED.

Dardis, Anthony (2009) A structure for mental causation. In: UNSPECIFIED.

Dawidowicz, Edward and Jackson, Vairzora and Bryant, Thomas E and Adams, Martin (2003) The Right Information… and Intelligent Nodes. In: UNSPECIFIED.

Imbert, Cyrille (2014) Realism about the complexity of physical systems without realist commitments to their scientific representations: How to get the advantages of theft without honest toil. In: UNSPECIFIED.

Kuhlmann, Meinard (2006) How Do Microscopic Models of Financial Markets Explain? In: UNSPECIFIED. (Unpublished)

Mattingly, James and Warwick, Walter (2006) Projectible Predicates in Analogue and Simulated Systems. In: UNSPECIFIED. (Unpublished)

Mayo-Wilson, Conor (2014) Structural Chaos. In: UNSPECIFIED.

O'Malley, Maureen A. and Brigandt, Ingo and Love, Alan C. and Crawford, John W. and Gilbert, Jack A. and Knight, Rob and Mitchell, Sandra D. and Rohwer, Forest (2014) Multilevel Research Strategies and Biological Systems. In: UNSPECIFIED.

Parker, Matthew W. (2006) Computing the Uncomputable, or, The Discrete Charm of Second-Order Simulacra. In: UNSPECIFIED. (Unpublished)

Parker, Matthew W. (2008) Computing the Uncomputable, or, The Discrete Charm of Second-order Simulacra. In: UNSPECIFIED.

Pietsch, Wolfgang (2014) Aspects of theory-ladenness in data-intensive science. In: UNSPECIFIED.

Pietsch, Wolfgang (2013) Big Data – The New Science of Complexity. In: UNSPECIFIED.

Reutlinger, Alexander (2013) Why Is There Universal Macro-Behavior? Renormalization Group Explanation As Non-causal Explanation. In: UNSPECIFIED.

Thornburg, M. Hayden (2012) New Work for a Theory of Emergence. In: UNSPECIFIED.

Werndl, Charlotte and Frigg, Roman (2014) Rethinking Boltzmannian Equilibrium. In: UNSPECIFIED.

Winning, Jason (2021) Open-Ended Control vs. Closed-Ended Control: Limits of Mechanistic Explanation. In: UNSPECIFIED.

Zednik, Carlos (2014) Are Systems Neuroscience Explanations Mechanistic? In: UNSPECIFIED.

huneman, philippe (2006) Emergence made ontological ? Computational vs. combinatorial approaches. In: UNSPECIFIED.

Published Article or Volume

Aames, Jimmy (2019) Patternhood and Generality: A Peircean Approach to Emergence. European Journal of Pragmatism and American Philosophy, XI (2).

Alrøe, Hugo Fjelsted and Noe, Egon (2011) The paradox of scientific expertise: A perspectivist approach to knowledge asymmetries. Fachsprache - International Journal of Specialized Communication , XXXIV (3–4). pp. 152-167.

Bich, Leonardo and Moreno, Alvaro (2015) The role of regulation in the origin and synthetic modelling of minimal cognition. BioSystems.

Bich, Leonardo and Mossio, Matteo and Ruiz-Mirazo, Kepa and Moreno, Alvaro (2015) Biological regulation: controlling the system from within. Biology & Philosophy.

Bich, Leonardo (2021) Autonomous Systems and the Place of Biology Among Sciences. Perspectives for an Epistemology of Complex Systems. Multiplicity and Interdisciplinarity. Essays in Honor of Eliano Pessa. pp. 41-57.

Bich, Leonardo (2018) Robustness and autonomy in biological systems: how regulatory mechanisms enable functional integration, complexity and minimal cognition through the action of second-order control constraints. Biological Robustness. Emerging Perspectives from within the Life Sciences. pp. 123-147.

Bich, Leonardo (2019) The problem of functional boundaries in prebiotic and inter-biological systems. Minati, G., Pessa E. and Abram, M. (eds) Systemics of Incompleteness and Quasi-Systems. pp. 295-302.

Bich, Leonardo and Bechtel, William (2022) Control Mechanisms: Explaining the Integration and Versatility of Biological Organisms. Adaptive Behavior.

Bich, Leonardo and Bechtel, William (2022) Organization needs organization: Understanding integrated control in living organisms. Studies in History and Philosophy of Science, 93. pp. 96-106. ISSN 0039-3681

Bich, Leonardo and Frick, Ramiro (2018) Synthetic Modelling of Biological Communication: A Theoretical and Operational Framework for the Investigation of Minimal Life and Cognition. Complex Systems, 27 (3). pp. 267-287. ISSN 0891-2513

Bich, Leonardo and Green, Sara (2016) Is defining life pointless? Operational definitions at the frontiers of Biology. Synthese. ISSN 1573-0964

Cazzolla Gatti, Roberto and Menéndez, Lumila Paula and Laciny, Alice and Bobadilla, Hernán and Bravo Morante, Guillermo and Carmen, Esther and Dorninger, Christian and Fabris, Flavia and Grunstra, Nicole D.S. and Schnorr, Stephanie and Stuhlträger, Julia and Villanueva Hernández, Luis Alejandro and Jakab, Manuel and Sarto-Jackson, Isabella and Caniglia, Guido (2021) Diversity lost: COVID-19 as a phenomenon of the total environment. Science of The Total Environment, 756. p. 144014.

Deulofeu, Roger and Suárez, Javier (2023) Pluralism and Complexity Without Integration? A Critical Appraisal of Mitchell’s Integrative Pluralism.

Donhauser, Justin (2016) Theoretical ecology as etiological from the start. Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 60. 67 - 76.

Eliassi-Rad, T and Farrell, H and Garcia, D and Lewandowsky, S and Palacios, Patricia and Ross, Don and Sornette, D and Thebault, Karim P Y and Wiesner, Karoline (2020) What science can do for democracy – A complexity science approach.

Favela, Luis H. and Amon, Mary Jean and Lobo, Lorena and Chemero, Anthony (2021) Empirical Evidence for Extended Cognitive Systems. Cognitive Science, 45 (e13060). pp. 1-27.

Filomeno, Aldo (2019) Stable regularities without governing laws? Studies in History and Philosophy of Modern Physics. ISSN 1355-2198

Franco, Marco P. Vianna and Molnár, Orsolya and Dorninger, Christian and Laciny, Alice and Treven, Marco and Weger, Jacob and da Motta e Albuquerque, Eduardo and Cazzolla Gatti, Roberto and Villanueva Hernandez, Luis-Alejandro and Jakab, Manuel and Marizzi, Christine and Menéndez, Lumila Paula and Poliseli, Luana and Bobadilla, Hernán (2022) Diversity Regained: Precautionary Approaches to COVID-19 as a Phenomenon of the Total Environment. Science of The Total Environment, 825. p. 154029.

Franklin, Alexander and Knox, Eleanor (2018) Emergence Without Limits: the Case of Phonons. Studies in the History and Philosophy of Modern Physics. ISSN 1355-2198

Franklin, James (1994) The formal sciences discover the philosophers' stone. Studies in History and Philosophy of Science Part A, 25 (4). pp. 513-533. ISSN 00393681

Gelfert, Axel (2018) Models in Search of Targets: Exploratory Modelling and the Case of Turing Patterns. Philosophy of Science: Between the Natural Sciences, the Social Sciences, and the Humanities. pp. 245-269.

Greslehner, Gregor P. (2018) The "unreasonable effectiveness of mathematics" in biology and the fallacy from complexity. Gabriele M. Mras, Paul Weingartner & Bernhard Ritter (eds.) Contributions of the Austrian Ludwig Wittgenstein Society Volume XXVI. Philosophy of Logic and Mathematics. Contributions of the 41st International Wittgenstein Symposium. pp. 70-72.

Hooker, Cliff (2018) Re-modelling scientific change: complex systems frames innovative problem solving. Lato Sensu, revue de la Société de philosophie des sciences, 5 (1). pp. 4-12. ISSN 2295-8029

Kinney, David (2021) Ladyman and Wiesner's What Is a Complex System? BJPS Review of Books.

LaCroix, Travis (2020) Communicative Bottlenecks Lead to Maximal Information Transfer. Journal of Experimental and Theoretical Artificial Intelligence.

Ludwig, David (2018) Does Cognition Still Matter in Ethnobiology? Ethnobiology Letters.

Luigi, Scorzato (2012) On the role of simplicity in science. Synthese. ISSN 1573-0964

Martínez, Sergio F. (2019) What is innovation? New lessons from biology. THEORIA. An International Journal for Theory, History and Foundations of Science, 34 (3). pp. 343-355. ISSN 2171-679X

Mossio, Matteo and Bich, Leonardo (2014) WHAT MAKES BIOLOGICAL ORGANISATION TELEOLOGICAL? Synthese. ISSN 1573-0964

Mossio, Matteo and Bich, Leonardo and Moreno, Alvaro (2013) Emergence, closure and inter-level causation in biological systems. Erkenntnis, 78 (2). pp. 153-178. ISSN 0165-0106

Northcott, Robert (2017) When are purely predictive models best? Disputatio. pp. 631-656.

Onnis, Erica (2023) Emergence: A pluralist approach. THEORIA. An International Journal for Theory, History and Foundations of Science, 38 (3). pp. 339-355. ISSN 2171-679X

Sarma, Gopal P. and Faundez, Victor (2017) Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices. Cellular Logistics, 7 (4).

Sergeyev, Yaroslav (2016) The exact (up to infinitesimals) infinite perimeter of the Koch snowflake and its finite area. Communications in Nonlinear Science and Numerical Simulation, 31 (1-3). pp. 21-29.

Suárez, Javier and Triviño, Vanessa (2020) What Is a Hologenomic Adaptation? Emergent Individuality and Inter-Identity in Multispecies Systems. Frontiers in Psychology, 11 (187). ISSN 1664-1078

Tabatabaei Ghomi, Hamed (2022) Setting the demons loose: computational irreducibility does not guarantee unpredictability or emergence. Philosophy of Science, 89. pp. 761-783.

Trnka, Radek and Lorencova, Radmila (2016) Quantum anthropology: Man, cultures, and groups in a quantum perspective. pp. 1-191. ISSN 978-80-246-3526-2

Wiesner, Karoline and Birdi, A and Eliassi-Rad, T and Farrell, H and Garcia, D and Lewandowsky, S and Palacios, Patricia and Ross, Don and Sornette, D and Thebault, Karim P Y (2018) Stability of democracies: a complex systems perspective. European Journal of Physics.

Winning, Jason (2020) Internal Perspectivalism: The Solution to Generality Problems About Proper Function and Natural Norms. Biology & Philosophy. ISSN 1572-8404

Winning, Jason (2018) Mechanistic Causation and Constraints: Perspectival Parts and Powers, Non-Perspectival Modal Patterns. British Journal for the Philosophy of Science. ISSN 1464-3537

Zach, Martin and Greslehner, Gregor P. (2023) Understanding immunity: an alternative framework beyond defense and strength. Biology & Philosophy, 38 (1). ISSN 1572-8404

Zafiris, Elias and Karakostas, Vassilios (2019) Category-Theoretic Interpretative Framework of the Complementarity Principle in Quantum Mechanics. International Journal of Theoretical Physics, 58. pp. 4208-4234. ISSN 0020-7748

Zednik, Carlos (2011) The Nature of Dynamical Explanation. Philosophy of Science, 78 (2). pp. 238-263.

Other

Abbott, Russ (2015) Causality, computing, and complexity. UNSPECIFIED.

Liu, Chuang (2002) Spontaneous Symmetry Breaking and Chance. UNSPECIFIED. (Unpublished)

Miller, Ryan (2019) The Mereology of Emergence. UNSPECIFIED.

Wilson, Jessica Metaphysical Emergence: Weak and Strong. unpublished stable ms..