Number of items at this level: 271.
A
Abir-Am, Pnina Geraldine
(2014)
García-Sancho. 2012. Biology, Computing, and the History of Molecular Sequencing; From Proteins to DNA, 1945-2000.
THEORIA. An International Journal for Theory, History and Foundations of Science, 29 (3).
pp. 433-436.
ISSN 2171-679X
Adam, Matthias
(2005)
Integrating research and development: the emergence of rational drug design in the pharmaceutical industry.
[Preprint]
Adam, Matthias
(2009)
Multi-level complexities in technological development: Competing strategies for drug discovery.
[Preprint]
Austin, Christopher J.
(2016)
Aristotelian Essentialism: Essence in the Age of Evolution.
[Preprint]
Austin, Christopher J.
(2015)
The Dispositional Genome: Primus Inter Pares.
[Preprint]
Austin, Christopher J.
(2016)
The Ontology of Organisms: Mechanistic Modules or Patterned Processes?
[Preprint]
Austin, Christopher J.
(2020)
Organisms, Activity, and Being: On the Substance of Process Ontology.
[Preprint]
Austin, Christopher J.
(2017)
Recent Work in The Philosophy of Biology.
[Preprint]
B
Baetu, Tudor
(2010)
A defense of syntax-based gene concepts in postgenomics: ‘Genes as modular subroutines in the master genomic program’.
In: UNSPECIFIED.
Bartol, Jordan
(2015)
Biochemical Kinds.
[Preprint]
Bartol, Jordan
(2012)
Re-Examining the Gene in Personalized Genomics.
Barwich, Ann-Sophie
(2021)
Fishing for Genes: How the Largest Gene Family in the Mammalian Genome was Found (and Why Idiosyncrasy in Exploration Matters).
Perspectives on Science, 29 (4).
Barwich, Ann-Sophie
(2018)
How to be rational about empirical success in ongoing science: The case of the quantum nose and its critics.
Studies in History and Philosophy of Science.
Barwich, Ann-Sophie
(2020)
Imaging the living brain: Reductionism revisited in times of dynamical systems.
[Preprint]
Barwich, Ann-Sophie
(2020)
What Makes a Discovery Successful? The Story of Linda Buck and the Olfactory Receptors.
Cell, 181 (4).
pp. 749-753.
Barwich, Ann-Sophie and Bschir, Karim
(2017)
The Manipulability of What? The History of G-Protein Coupled Receptors.
Biology & Philosophy.
ISSN 1572-8404
Barwich, Ann-Sophie and Bschir, Karim
(2017)
The Manipulability of What? The History of G-Protein Coupled Receptors.
Biology & Philosophy.
ISSN 1572-8404
Barwich, Ann-Sophie and Firestein, Stuart and Dietrich, Michael R.
(2024)
Wider than the Sky: An Alternative to “Mapping” the World onto the Brain.
[Preprint]
Baxter, Janella
(2015)
Engineering Novel Proteins with Orthogonal tRNA: Artificial Causes that make a Difference.
In: UNSPECIFIED.
Baxter, Janella
(2019)
CRISPR-Cas Changing Biology?
[Preprint]
Baxter, Janella
(2021)
When is it Safe to Edit the Human Germline.
[Preprint]
Bechtel, William
(2012)
From molecules to behavior and the clinic: Integration in Chronobiology.
[Preprint]
Bechtel, William
(2012)
Understanding Biological Mechanisms: Using Illustrations from Circadian Rhythm Research.
[Preprint]
Bechtel, William and Abrahamsen, Adele
(2013)
Diagrams as Vehicles for Scientific Reasoning.
[Preprint]
Bechtel, William and Abrahamsen, Adele
(2012)
Thinking Dynamically About Biological Mechanisms: Networks of Coupled Oscillators.
[Preprint]
Bechtel, William
(2017)
Analyzing network models to make discoveries about biological mechanisms.
British Journal for the Philosophy of Science.
Bechtel, William
(2021)
Discovering control mechanisms: The controllers of dynein.
In: UNSPECIFIED.
Bechtel, William
(2017)
Explaining features of fine-grained phenomena using abstract analyses of phenomena and mechanisms: two examples from chronobiology.
Synthese.
Bechtel, William
(2019)
From Parts to Mechanisms: Research Heuristics for Addressing Heterogeneity in Cancer Genetics.
[Preprint]
Bechtel, William
(2018)
The Importance of Constraints and Control in Biological Mechanisms: Insights from Cancer Research.
[Preprint]
Bechtel, William
(2017)
Using the hierarchy of biological ontologies to identify mechanisms in flat networks.
Biology and Philosophy.
Bechtel, William and Bollhagen, Andrew
(2021)
Active Biological Mechanisms: Transforming Energy into Motion in Molecular Motors.
[Preprint]
Bechtel, Williiam
(2016)
Explicating Top-‐Down Causation Using Networks and Dynamics.
[Preprint]
Birch, Jonathan
(2014)
Gene mobility and the concept of relatedness.
[Preprint]
Birch, Jonathan
(2017)
Fitness Maximization.
[Preprint]
Birch, Jonathan
(2012)
Robust Processes and Teleological Language.
European Journal for Philosophy of Science.
ISSN 1879-4912
Bogen, Jim and Machamer, Peter
(2010)
Mechanistic Information and Causal Continuity.
[Preprint]
Bolinska, Agnes
(2024)
Models of Information in Structural Biology.
In: UNSPECIFIED.
Bolinska, Agnes
(2018)
Synthetic versus Analytic Approaches to Protein and DNA Structure Determination.
[Preprint]
Bollhagen, Andrew
(2020)
The "Inch-Worm Episode": Reconstituting the Phenomenon of Kinesin Motility.
In: UNSPECIFIED.
Bollhagen, Andrew
(2021)
The Inchworm Episode: Reconstituting the Phenomenon of Kinesin Motility.
[Preprint]
Bourrat, Pierrick and Lu, Qiaoying
(2017)
Dissolving the Missing Heritability Problem.
[Preprint]
Bourrat, Pierrick and Lu, Qiaoying
(2016)
Dissolving the missing heritability problem.
In: UNSPECIFIED.
Bradley, Seamus and Thebault, Karim P Y
(2017)
Models on the Move: Migration and Imperialism.
[Preprint]
Brigandt, Ingo
(2015)
Do We Need a 'Theory' of Development?
[Preprint]
Brigandt, Ingo
(2009)
The Epistemic Goal of a Concept: Accounting for the Rationality of Semantic Change and Variation.
[Preprint]
Brigandt, Ingo
(2011)
Explanation in Biology: Reduction, Pluralism, and Explanatory Aims.
[Preprint]
Brigandt, Ingo
(2013)
Systems Biology and the Integration of Mechanistic Explanation and Mathematical Explanation.
[Preprint]
Brigandt, Ingo
(2004)
An alternative to Kitcher's theory of conceptual progress and his account of the change of the gene concept.
[Preprint]
Brigandt, Ingo
(2017)
Explanation of Molecular Processes Without Tracking Mechanism Operation.
[Preprint]
Brigandt, Ingo and Green, Sara and O'Malley, Maureen
(2016)
Systems Biology and Mechanistic Explanation.
[Preprint]
Brunet, Tyler D P
(2022)
Higher Level Constructive Neutral Evolution.
[Preprint]
Burian, Richard M.
(2008)
On microRNA and the Need for Exploratory Experimentation in Post-Genomic Molecular Biology.
[Preprint]
Burnston, Daniel
(2016)
Real Patterns in Biological Explanation.
In: UNSPECIFIED.
Buzzoni, Marco and Tesio, Luigi and Stuart, Michael T.
(2022)
Holism and Reductionism in the Illness/Disease Debate.
From Electrons to Elephants and Elections: Saga of Content and Context.
pp. 743-778.
ISSN 978-3-030-92192-7
C
Callaerts, Nephtali and Hocquet, Alexandre and Wieber, Frederic
(2023)
“Conducted properly, published incorrectly”: the evolving status of gel electrophoresis images along instrumental transformations in times of reproducibility crisis.
[Preprint]
Campero, María Belén and Favre, Cristián and Saborido, Cristian
(2020)
Dying to live. Cell death as a regulatory process.
THEORIA. An International Journal for Theory, History and Foundations of Science, 35 (2).
pp. 197-215.
ISSN 2171-679X
Chen, Ruey-Lin
(2018)
Individuating Genes as Types or Individuals:
Philosophical Implications on Individuality, Kinds, and Gene Concepts.
In: UNSPECIFIED.
Chen, Ruey-Lin
(2023)
Scientific exploration of causation in biomedical research: The case of gene targeting on mouse embryonic stem cells.
UNSPECIFIED.
Cosgrove, Joseph
(2024)
Order, Organization, and Randomness: On the Mathematical Formulation of Life.
[Preprint]
D
Darden, Lindley and Pal, Lipika R. and Kundu, Kunal and Moult, John
(2017)
The Product Guides the Process: Discovering Disease Mechanisms.
[Preprint]
DiFrisco, James and Jaeger, Johannes
(2021)
Homology of process: developmental dynamics in comparative biology.
[Preprint]
DiFrisco, James and Ramsey, Grant
(2023)
Adaptationism and Trait Individuation.
Philosophy of Science, 90 (5).
pp. 1234-1243.
Dietrich, Michael R. and Millstein, Roberta L.
(2007)
The Role of Causal Processes in the Neutral and Nearly Neutral Theories.
[Preprint]
Downes, Stephen M.
(2003)
Biological Information.
[Preprint]
Downes, Stephen M.
(2021)
The role of ancient DNA research in archaeology.
Topoi, 40.
pp. 285-293.
Dunn, Cory D.
(2017)
Some Liked It Hot: A Hypothesis Regarding Establishment of the
Proto-Mitochondrial Endosymbiont During Eukaryogenesis.
Journal of Molecular Evolution, 85.
pp. 99-106.
Díez, José and Suárez, Javier
(2023)
How do networks explain? A neo-Hempelian approach to network explanations of the ecology of the microbiome.
[Preprint]
E
Elliott, Tyler A. and Linquist, Stefan and Gregory, T. Ryan
(2014)
Conceptual and empirical challenges of ascribing functions to transposable elements.
[Preprint]
Esfeld, Michael
(2005)
The causal homogeneity of biological kinds.
[Preprint]
Evans, Nicholas G. and Pence, Charles H.
(2024)
Gain of Function Research and Model Organisms in Biology.
Journal of Medical Ethics, 50 (3).
pp. 201-206.
ISSN 1473-4257
F
Fagan, Melinda B.
(2012)
The stem cell uncertainty principle.
In: UNSPECIFIED.
Farrell, Margaret
(2023)
Causal selection in context: explaining gene centrism.
[Preprint]
Frost-Arnold, Greg
(2004)
How to be an Anti-Reductionist about Developmental Biology: Response to Laubichler and Wagner.
[Preprint]
G
Giere, Ronald
(2009)
Representing with Physical Models.
[Preprint]
Giroux, Élodie
(2021)
L’exposome : vers une science intégrative
des expositions ?
Lato Sensu, revue de la Société de philosophie des sciences, 8 (3).
pp. 9-28.
ISSN 2295-8029
Glynn, Luke
(2010)
Deterministic Chance.
British Journal for the Philosophy of Science, 61 (1).
pp. 51-80.
Goddiksen, Mads
(2014)
Explanatory standards in biology and physics textbooks: The case of polymers.
[Preprint]
Godfrey-Smith, Peter
(2013)
Sender-Receiver Systems Within and Between Organisms.
In: UNSPECIFIED.
Goldwasser, Seth
(2022)
Finding Normality in Abnormality: On the Ascription of Normal Function to Cancer.
In: UNSPECIFIED.
Goldwasser, Seth
(2023)
Standard Aberration: Cancer Biology and the Modeling Account of Normal Function.
[Preprint]
Grant, Ramsey and Cristina, Villegas
(2024)
Developmental Channeling and Evolutionary Dappling.
Philosophy of Science.
pp. 1-18.
Green, Sara and Dam, Mie S. and Svendsen, Mette N.
(2021)
Mouse Avatars of Human Cancers:
The Temporality of Translation in Precision Oncology.
[Preprint]
Green, Sara and Hillersdal, Line
(2021)
Aging biomarkers and the measurement of health and risk.
[Preprint]
Green, Sara and Serban, Maria and Scholl, Raphael and Jones, Nicholaos and Brigandt, Ingo and Bechtel, William
(2016)
Network Analyses in Systems Biology: New Strategies for Dealing with Biological Complexity.
[Preprint]
Green, Sara and Vogt, Henrik
(2016)
Personalizing medicine in silico and in socio.
In: UNSPECIFIED.
Green, Sara and Vogt, Henrik
(2016)
Personalizing medicine in silico and in socio.
Humana.Mente Journal of Philosophical Studies.
Greslehner, Gregor P.
(2018)
What do molecular biologists mean when they say 'structure determines function'?
In: UNSPECIFIED.
Griffiths, Paul and Gray, Russell
(2002)
The Developmental Systems Perspective: Organism-environment systems as units of development and evolution.
[Preprint]
Griffiths, Paul and Tabery, James
(2008)
Behavioral Genetics and Development: Historical and Conceptual Causes of Controversy.
[Preprint]
Griffiths, Paul E
(2002)
The Fearless Vampire Conservator: Philip Kitcher, Genetic Determinism and the Informational Gene.
[Preprint]
Griffiths, Paul E
(2002)
The Fearless Vampire Conservator: Phillip Kitcher and Genetic Determinism.
[Preprint]
Griffiths, Paul E and Stotz, Karola
(2005)
Gene.
[Preprint]
Griffiths, Paul E and Stotz, Karola
(2006)
Genes in the postgenomic era.
[Preprint]
Griffiths, Paul Edmund
(2000)
Genetic Information: A Metaphor in Search of a Theory.
[Preprint]
Griffiths, Paul Edmund
(2000)
The Philosophy of Molecular and Developmental Biology.
[Preprint]
Guttinger, Stephan and Love, Alan C.
(2020)
modENCODE and the elaboration of functional genomic methodology.
[Preprint]
H
Haber, Matthew H.
(2019)
Species in the Age of Discordance.
Philosophy, Theory, and Practice in Biology, 11 (021).
ISSN 2475-3025
Haber, Matthew H. and Molter, Daniel J.
(2019)
Species in the Age of Discordance: Meeting Report and Introduction.
Philosophy, Theory, and Practice in Biology, 11 (012).
ISSN 2475-3025
Hall, Melinda
(2013)
Mere Deviation, Critically Assessing Prenatal Testing.
In: UNSPECIFIED.
Hangleiter, Dominik and Carolan, Jacques and Thebault, Karim P Y
(2021)
Analogue Quantum Simulation: A New Instrument for Scientific Understanding.
[Preprint]
Havstad, Joyce C
(2020)
Complexity Begets Crosscutting, Dooms Hierarchy (Another Paper on Natural Kinds).
[Preprint]
Havstad, Joyce C
(2021)
Sensational Science, Archaic Hominin Genetics,
and Amplified Inductive Risk.
[Preprint]
Hazelwood, Caleb
(2022)
Review of Observing Evolution by Bruce S. Grant.
History and Philosophy of the Life Sciences.
Hazelwood, Caleb
(2021)
The Species Category as a Scientific Kind.
Synthese.
Hicks, Daniel
(2015)
Epistemological Depth in a GM Crops Controversy.
[Preprint]
Hicks, Daniel
(2017)
Genetically Modified Crops, Inclusion, and Democracy.
Perspectives on Science.
I
Illari, Phyllis and Russo, Federica
(2016)
Information channels and biomarkers of disease.
[Preprint]
Ioannidis, Stavros and Psillos, Stathis
(2017)
In Defense of Methodological Mechanism: The Case of Apoptosis.
Axiomathes.
ISSN 1572-8390
J
Jantzen, Benjamin and Danks, David
(2008)
Biological Codes and Topological Causation.
[Preprint]
Jodoin, Laurent
(2014)
Génétique des populations et mécanique statistique : stratégie explicative et analogie formelle.
Lato Sensu, revue de la Société de philosophie des sciences, 1 (1).
pp. 12-25.
ISSN 2295-8029
Jones, Elizabeth
(2019)
Ancient Genetics to Ancient Genomics:
Celebrity and Credibility in Data-Driven Practice.
[Preprint]
K
Kesić, Srdjan
(2019)
Rethinking the pragmatic systems biology and systems-theoretical biology divide: toward a complexity-inspired epistemology of systems biomedicine.
Medical hypotheses, 131.
p. 109316.
Kieval, Phillip Hintikka and Westerblad, Oscar
(2024)
Deep Learning as Method-Learning: Pragmatic Understanding, Epistemic Strategies and Design-Rules.
In: UNSPECIFIED.
Kistler, Max
(2007)
Mechanisms and Downward Causation.
In: UNSPECIFIED.
Knuuttila, Tarja and Loettgers, Andrea
(2010)
Modeling and experimenting:
The combinational strategy in synthetic biology.
In: UNSPECIFIED.
Knuuttila, Tarja and Loettgers, Andrea
(2012)
Synthetic Modeling and Mechanistic Account:
Material Recombination and Beyond.
In: UNSPECIFIED.
Knuuttila, Tarja and Loettgers, Andrea
(2011)
Synthetic Modeling and the Functional Role of Noise.
In: UNSPECIFIED.
Knuuttila, Tarja and Loettgers, Andrea
(2013)
Varieties of Noise:
Analogical Reasoning in Synthetic Biology.
[Preprint]
Korenić, Andrej and Perović, Slobodan and Cirkovic, Milan M. and Miquel, Paul-Antoine
(2019)
Symmetry breaking and functional incompleteness in biological systems.
[Preprint]
Kostic, Daniel and Hilgetag, Claus and Tittgemeyer, Marc
(2020)
Unifying the essential concepts of biological networks: biological insights and philosophical foundations.
[Preprint]
Krohs, Ulrich
(2021)
The epistemology of biomimetics: the role of models and of morphogenetic principles.
[Preprint]
Kumar, Manish
(2023)
Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics.
[Preprint]
Kumar, Manish
(2023)
Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics.
[Preprint]
Kõiv, Riin
(2023)
Genetically caused trait is an interactive kind.
[Preprint]
L
Laplane, Lucie and Duluc, Dorothée and Bikfalvi, Andreas and Larmonier, Nicolas and Pradeu, Thomas
(2019)
Beyond the tumour microenvironment.
International Journal of Cancer, 145 (10).
pp. 2611-2618.
ISSN 0020-7136
Laplane, Lucie and Duluc, Dorothée and Larmonier, Nicolas and Pradeu, Thomas and Bikfalvi, Andreas
(2018)
The Multiple Layers of the Tumor Environment.
Trends in Cancer, 4 (12).
pp. 802-809.
ISSN 24058033
Lean, Christopher and Doolittle, W. Ford and Bielawski, Joseph
(2022)
Community-level evolutionary processes: Linking community genetics with replicator-interactor theory.
[Preprint]
Lean, Oliver M
(2019)
Binding Specificity and Causal Selection in Drug Design.
[Preprint]
Lean, Oliver M
(2019)
Chemical Arbitrariness and the Causal Role of Molecular Adapters.
[Preprint]
Lemoine, Maël and Pradeu, Thomas
(2018)
Dissecting the Meanings of “Physiology” to Assess the Vitality of the Discipline.
Physiology, 33 (4).
pp. 236-245.
ISSN 1548-9213
Leonelli, Sabina
(2008)
On the Locality of Data and Claims about Phenomena.
In: UNSPECIFIED.
Levy, Arnon and Bechtel, William
(2016)
Towards Mechanism 2.0: Expanding the Scope of Mechanistic Explanation.
In: UNSPECIFIED.
Linquist, Stefan and Cottenie, Karl and Elliott, Tyler and Saylor, Brent and Kremer, Stefan and Gregory, T. Ryan
(2015)
Applying ecological models to communities of genetic elements: the case of neutral theory.
[Preprint]
Linquist, Stefan and Saylor, Brent and Cottenie, Karl and Elliott, Tyler A. and Kremer, Stefan C. and Gregory, T. Ryan
(2013)
Distinguishing ecological from evolutionary approaches to transposable elements.
[Preprint]
Liu, Katherine E
(2017)
Rethinking Causation in Cancer with Evolutionary Developmental Biology.
Biological Theory.
Lu, Qiaoying and Bourrat, Pierrick
(2017)
The Evolutionary Gene and the Extended Evolutionary Synthesis.
[Preprint]
Luchetti, Michele
(2018)
Constitutive elements in science beyond physics: the case of the Hardy–Weinberg principle.
[Preprint]
López-Rubio, Ezequiel and Ratti, Emanuele
(2019)
Data science and molecular biology: prediction and mechanistic explanation.
[Preprint]
M
Malaterre, Christophe
(2009)
Can synthetic biology shed light on the origin of life?
[Preprint]
Malaterre, Christophe
(2011)
Making Sense of Downward Causation in Manipulationism.
With Illustrations from Cancer Research.
History and Philosophy of the Life Sciences, 33 (4).
pp. 537-562.
Malinowska, Joanna Karolina and Serpico, Davide
(2023)
Epistemological Pitfalls in the Proxy Theory of Race: The Case of Genomics-Based Medicine.
The British Journal for the Philosophy of Science.
ISSN 1464-3537
Martens, Niels C.M.
(2022)
Dark Matter Realism.
Foundations of Physics, 52 (1).
ISSN 0015-9018
Matthews, Lucas J.
(2017)
On mechanistic reasoning in unexpected places: the case of population genetics.
[Preprint]
Meloni, Maurizio and Reynolds, Jack
(2020)
Thinking embodiment with genetics: epigenetics and postgenomic biology in embodied cognition and enactivism.
[Preprint]
Meneganzin, Andra and Ramsey, Grant and DiFrisco, James
(2024)
What is a trait? Lessons from the human chin.
JEZ-B Molecular and Developmental Evolution, 342 (2).
pp. 65-75.
Meunier, Robert
(2018)
Project knowledge and its resituation in the design of research projects: Seymour Benzer's behavioral genetics, 1965-1974.
Studies in History and Philosophy of Science Part A.
Meyer, Russell
(2020)
Dynamical Causes.
[Preprint]
Meynell, Letitia
(2024)
Are There Two Sexes? Yes and No, But Mostly No (and Gender is Something Else Anyway—More or Less).
[Preprint]
Militello, Guglielmo and Moreno, Alvaro
(2018)
Structural and organisational for being a machine.
[Preprint]
N
Ndhlovu, Andrew and Durand, Pierre and Ramsey, Grant
(2020)
Programmed cell death as a black queen in microbial communities.
Molecular Ecology.
pp. 1-10.
Nicholson, Daniel J. and Dupré, John
(2018)
Genidentity and Biological Processes.
Northcott, Robert
(2008)
Innateness and Science.
In: UNSPECIFIED.
Northcott, Robert and Piccinini, Gualtiero
(2018)
Conceived This Way: Innateness Defended.
Philosophers' Imprint, 18 (18).
pp. 1-16.
Novick, Aaron and Scholl, Raphael
(2017)
Presume It Not: True Causes in the Search for the Basis of Heredity.
[Preprint]
O
O'Malley, Maureen
(2008)
Exploratory experimentation and scientific practice: Metagenomics and the proteorhodopsin case.
[Preprint]
O'Malley, Maureen A. and Brigandt, Ingo and Love, Alan C. and Crawford, John W. and Gilbert, Jack A. and Knight, Rob and Mitchell, Sandra D. and Rohwer, Forest
(2014)
Multilevel Research Strategies and Biological Systems.
In: UNSPECIFIED.
Osimani, Barbara
(2014)
Causing something to be one way rather than another: Genetic Information, causal specificity and the relevance of linear order.
Kybernetes, 43 (6).
pp. 865-881.
P
Pence, Charles H.
(2022)
Of Stirps and Chromosomes: Generality Through Detail.
[Preprint]
Pence, Charles H. and Swaim, Daniel G.
(2017)
The Economy of Nature: The Structure of Evolution in Linnaeus, Darwin, and Toward the Extended Synthesis.
European Journal for Philosophy of Science, 8.
pp. 435-454.
ISSN 1879-4912
Perović, Slobodan
(2019)
The Complexity-based Explanatory Strategy, Biological Levels, and the Origin of Life.
[Preprint]
Pilgrim, Jack
(2020)
A critical realist return to natural science: The case of biting midges and their symbiotic bacteria.
[Preprint]
Plutynski, A
(2018)
Cancer Modeling: the Advantages and Limitations of Multiple Perspectives.
Understanding Perspectivism: Scientific Challenges and Methodological Prospects.
Plutynski, A
(2013)
Cancer and the Goals of Integration.
[Preprint]
Plutynski, A
(2006)
Explaining how and explaining why: developmental and evolutionary explanations of dominance.
[Preprint]
Plutynski, A
(2007)
Neutralism.
Neutralism.
pp. 129-141.
Plutynski, Anya
(2021)
The Cancer Genome Atlas Project: Natural History, Experiment, or Something In-Between?
[Preprint]
Plutynski, Anya
(2021)
How is Cancer Complex?
[Preprint]
Plutynski, Anya and Bertolaso, Marta
(2018)
What and How do Cancer Systems Biologists Explain?
[Preprint]
Pradeu, Thomas
(2013)
Immunity and the emergence of individuality.
From Groups to Individuals: Evolution and Emerging Individuality.
Pradeu, Thomas
(2011)
A Mixed Self: The Role of Symbiosis in Development.
Biological Theory, 6.
pp. 80-88.
Pradeu, Thomas
(2016)
Mutualistic viruses and the heteronomy of life.
Studies in history and philosophy of biological and biomedical sciences.
ISSN 1879-2499
Pradeu, Thomas
(2009)
The Organism in Developmental System Theory (DST).
[Preprint]
Pradeu, Thomas
(2010)
What is an organism? An immunological answer.
[Preprint]
Pradeu, Thomas and Carosella, Edgardo D.
(2006)
On the definition of a criterion of immunogenicity.
[Preprint]
Pradeu, Thomas and Carosella, Edgardo D.
(2005)
The Self Model and the Conception of Biological Identity in Immunology.
[Preprint]
Pradeu, Thomas and Jaeger, Sébastien and Vivier, Eric
(2013)
The speed of change: towards a discontinuity theory of immunity?
Nature Reviews Immunology, 13.
pp. 764-769.
Pradeu, Thomas and Kostyrka, Gladys and Dupré, John
(2016)
Understanding viruses: Philosophical investigations.
Studies in history and philosophy of biological and biomedical sciences.
ISSN 1879-2499
Pradeu, Thomas and Laplane, Lucie and Prévot, Karine and Hoquet, Thierry and Reynaud, Valentine and Fusco, Giuseppe and Minelli, Alessandro and Orgogozo, Virginie and Vervoort, Michel
(2016)
Defining "Development".
Current topics in developmental biology, 117.
pp. 171-83.
ISSN 1557-8933
Pradeu, Thomas
(2019)
Immunology and individuality.
eLife, 8.
ISSN 2050-084X
Pradeu, Thomas
(2016)
Organisms or biological individuals? Combining physiological and evolutionary individuality.
Biology and Philosophy, 31 (6).
pp. 797-817.
Pradeu, Thomas
(2016)
The many faces of biological individuality.
Biology and Philosophy, 31 (6).
pp. 761-773.
Pradeu, Thomas and Daignan‐Fornier, Bertrand and Ewald, Andrew and Germain, Pierre‐Luc and Okasha, Samir and Plutynski, Anya and Benzekry, Sébastien and Bertolaso, Marta and Bissell, Mina and Brown, Joel S. and Chin‐Yee, Benjamin and Chin‐Yee, Ian and Clevers, Hans and Cognet, Laurent and Darrason, Marie and Farge, Emmanuel and Feunteun, Jean and Galon, Jérôme and Giroux, Elodie and Green, Sara and Gross, Fridolin and Jaulin, Fanny and Knight, Rob and Laconi, Ezio and Larmonier, Nicolas and Maley, Carlo and Mantovani, Alberto and Moreau, Violaine and Nassoy, Pierre and Rondeau, Elena and Santamaria, David and Sawai, Catherine M. and Seluanov, Andrei and Sepich‐Poore, Gregory D. and Sisirak, Vanja and Solary, Eric and Yvonnet, Sarah and Laplane, Lucie
(2023)
Reuniting philosophy and science to advance cancer research.
Biological Reviews.
ISSN 1464-7931
Pradeu, Thomas and Du Pasquier, Louis
(2018)
Immunological memory: What's in a name?
Immunological Reviews, 283 (1).
pp. 7-20.
ISSN 01052896
R
Ramsey, Grant
(2013)
Human Nature.
Elements in the Philosophy of Biology
.
Cambridge University Press, Cambridge, UK.
ISBN 978-1-108-71606-2
Ramsey, Grant and Durand, Pierre
(2019)
The Nature of Programmed Cell Death.
Biological Theory, 14.
pp. 30-41.
ISSN 1555-5550
Ratti, Emanuele
(2020)
Big Data in the Experimental Life Sciences.
Metascience.
ISSN 0815-0796
Ratti, Emanuele
(2018)
Models of' and 'Models for': On the Relation Between Mechanistic Models and Experimental Strategies in Molecular Biology.
[Preprint]
Ratti, Emanuele
(2020)
What Kind of Novelties Can Machine Learning Possibly Generate? The Case of Genomics.
[Preprint]
Ratti, Emanuele and Germain, Pierre-Luc
(2021)
A Relic of Design: Against Proper Functions in Biology.
Biology & Philosophy.
ISSN 1572-8404
Ratti, Emanuele and López-Rubio, Ezequiel
(2018)
Mechanistic Models and the Explanatory Limits of Machine Learning.
In: UNSPECIFIED.
Ratti, Emanuele and Stoeger, Thomas
(2021)
Large-scale Biology: Philosophical, Historical, and Computational Perspectives.
[Preprint]
Read, James and Sharma, Sumana
(2021)
Hypothesis-driven science in large-scale studies: the case of GWAS.
[Preprint]
Riemann, Ritsaart and Lynch, Kate E. and Gawronski, Stefan A. and Chan, Jack and Griffiths, Paul E.
(2024)
Classifying Genetic Essentialist Biases using Large Language Models.
[Preprint]
Robins, Sarah
(2020)
Fixed Engrams and Neural Dynamics.
[Preprint]
Roffé, Ariel Jonathan and Alleva, Karina and Ginnobili, Santiago and Barberis, Sergio Daniel
(2024)
The Open Texture of Functions: A Framework for Analyzing Functional Concepts in Molecular Biology.
[Preprint]
Ronai, Isobel
(2023)
How molecular techniques are developed from natural systems.
Genetics, 224 (3).
iyad067.
Ross, Lauren N.
(2018)
Causal concepts in biology: How pathways differ from mechanisms and why it matters.
[Preprint]
Ross, Lauren N.
(2017)
Causal selection and the pathway concept.
[Preprint]
Ross, Lauren N. and Kendler, Kenneth and Woodward, James
(2023)
Polygene risk scores and randomized experiments.
Behavioral and Brain Sciences, 46.
Ruiz-Narvaez, Edward A
(2021)
The emergent genome.
[Preprint]
S
Salinas, Dino
(2021)
AVERAGE AND STANDARD DEVIATION OF THE ERROR FUNCTION FOR RANDOM GENETIC CODES WITH STANDARD STOP CODONS.
[Preprint]
Sarma, Gopal P. and Faundez, Victor
(2017)
Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices.
Cellular Logistics, 7 (4).
Sartori, Lorenzo
(2023)
Model Organisms as Scientific Representations.
[Preprint]
Sarwar, Ameer
(2020)
Perspectives on Causal Specificity.
In: UNSPECIFIED.
Schindler, Samuel
(2007)
Model, Theory, and Evidence in the Discovery of the DNA Structure.
In: UNSPECIFIED.
Schlaepfer, Guillaume and Weber, Marcel
(2018)
Thought Experiments in Biology.
[Preprint]
Scholl, Raphael and Nickelsen, Kärin
(2014)
Discovery of causal mechanisms: Oxidative phosphorylation and the Calvin-Benson cycle.
History and Philosophy of the Life Sciences.
Scholl, Raphael
(2016)
Spot the difference: Causal contrasts in scientific diagrams.
[Preprint]
Seidenfeld, Teddy
(1998)
P's in a Pod: some recipes for cooking Mendel's data.
[Preprint]
Serban, Maria and Green, Sara
(2019)
Biological robustness: design, organization, and mechanisms.
[Preprint]
Serpico, Davide
(2020)
Beyond quantitative and qualitative traits: three telling cases in the life sciences.
Biology & Philosophy.
ISSN 1572-8404
Serpico, Davide
(2021)
The Cyclical Return of the IQ Controversy: Revisiting the Lessons of the Resolution on Genetics, Race and Intelligence.
Journal of the History of Biology.
Serpico, Davide
(2018)
What kind of kind is intelligence?
Philosophical Psychology, 31 (2).
pp. 232-252.
ISSN 0951-5089
Serpico, Davide and Borghini, Andrea
(2020)
From Obesity to Energy Metabolism: Ontological Perspectives on the Metrics of Human Bodies.
Topoi.
ISSN 1572-8749
Serpico, Davide and Maziarz, Mariusz
(2023)
Averaged versus Individualized: Pragmatic N-of-1 Design as a Method to Investigate Individual Treatment Response.
[Preprint]
Serpico, Davide and Petrolini, Valentina
(2023)
Crossing the Threshold: An Epigenetic Alternative to Dimensional Accounts of Mental Disorders.
British Journal for the Philosophy of Science.
ISSN 1464-3537
Shan, Yafeng
(2021)
Beyond Mendelism and Biometry.
[Preprint]
Sheredos, Benjamin and Burnston, Daniel and Abrahamsen, Adele and Bechtel, William
(2012)
Why do biologists use so many diagrams?
In: UNSPECIFIED.
Sheredos, Benjamin and Bechtel, William
(2016)
Imagining Mechanisms with Diagrams.
[Preprint]
Sikorski, Michał
(2022)
Is Forensic Science in Crisis?
[Preprint]
Simons, Massimiliano
(2020)
The Diversity of Engineering in Synthetic Biology.
NanoEthics, 14.
pp. 71-91.
ISSN 1871-4757
Simons, Massimiliano
(2021)
Dreaming of a Universal Biology: Synthetic Biology and the Origins of Life.
HYLE--International Journal for Philosophy of Chemistry, 91.
pp. 91-116.
ISSN 1433-5158
Simons, Massimiliano
(2021)
Synthetic Biology as a Technoscience: The Case of Minimal Genomes and Essential Genes.
Studies in History and Philosophy of Science Part A, 85.
pp. 127-136.
ISSN 00393681
Sirtes, Daniel
(2010)
A Pragmatic-Ontic Account of Mechanistic Explanation.
[Preprint]
Souto-Maior, Caetano
(2022)
Extraordinarily corrupt or statistically commonplace? Reproducibility crises may stem from a lack of understanding of outcome probabilities.
In: UNSPECIFIED.
Sterner, Beckett and Elliott, Steve and Wideman, Jeremy
(2022)
An account of conserved functions and how biologists use them to integrate cell and evolutionary biology.
[Preprint]
Stotz, Karola
(2006)
2001 and all that: a tale of a third science.
UNSPECIFIED.
Stotz, Karola
(2005)
With Genes like that who needs an Environment? Postgenomics' argument for the 'Ontogeny of Information'.
[Preprint]
Stotz, Karola and Bostanci, Adam and Griffiths, Paul E.
(2004)
Tracking the Shift to 'Postgenomics'.
[Preprint]
(In Press)
Stotz, Karola and Griffiths, Paul E. and Knight, Rob
(2004)
How Biologists Conceptualize Genes: An empirical study.
[Preprint]
Sustar, Predrag
(2006)
Neo-Functional Analysis: Phylogenetical Restrictions on Causal Role Functions.
In: UNSPECIFIED.
Suárez, Javier
(2016)
Bacterial species pluralism in the light of medicine and endosymbiosis.
THEORIA. An International Journal for Theory, History and Foundations of Science, 31 (1).
pp. 91-105.
ISSN 2171-679X
Suárez, Javier
(2023)
Masking, Extrinsicness, and the Nature of Dispositions: The Role of Niche Signals in Muscle Stem Cells.
T
Tabery, James
(2007)
Biometric and Developmental Gene-Environment Interaction: Looking Back, Moving Forward.
[Preprint]
Tabery, James
(2008)
Difference Mechanisms.
In: UNSPECIFIED.
Tabery, James
(2008)
Interactive Predispositions.
In: UNSPECIFIED.
Truchetet, Marie-Elise and Pradeu, Thomas
(2018)
Re-thinking our understanding of immunity: Robustness in the tissue reconstruction system.
Seminars in Immunology, 36.
pp. 45-55.
ISSN 10445323
V
Veigl, Sophie Juliane and Suárez, Javier and Stencel, Adrian
(2022)
Rethinking Hereditary Relations: The Reconstitutor as the Evolutionary Unit of Heredity.
[Preprint]
Veigl, Sophie Juliane and Suárez, Javier and Stencel, Adrian
(2022)
Rethinking Hereditary Relations: The Reconstitutor as the Evolutionary Unit of Heredity.
Synthese, 200 (367).
ISSN 1573-0964
Veit, Walter
(2018)
Procreative Beneficence and Genetic Enhancement.
KRITERION - Journal of Philosophy, 32 (1).
pp. 75-92.
Veit, Walter and Browning, Heather
(2022)
Darwinian and Autopoietic Views of the Organism.
[Preprint]
Veit, Walter and Browning, Heather
(2022)
Polygenic Scores and Social Science.
[Preprint]
Vidal, Oriol and Teira, David
(2020)
Has classical gene position been practically reduced?
Biology & Philosophy.
ISSN 1572-8404
van Dijk, Peter J.
(2020)
Gregor Mendel’s meeting with Pope Pius IX: the truth in the story.
[Preprint]
van Dijk, Peter J. and Ellis, T. H. Noel
(2020)
Mendel’s journey to Paris and London: context and significance for the origin of genetics.
[Preprint]
W
Waters, C. Kenneth
(2008)
Beyond Theoretical Reduction and Layer-Cake Antireduction: How DNA Retooled Genetics and Transformed Biological Practice.
[Preprint]
Waters, C. Kenneth
(2007)
Causes that Make a Difference.
[Preprint]
Waters, C. Kenneth
(2006)
How Practical Know-how Contextualizes Theoretical Knowledge: Exporting Causal Knowledge from Laboratory to Nature.
[Preprint]
Waters, C. Kenneth
(2016)
No General Structure.
[Preprint]
Waters, C. Kenneth
(2013)
Shifting Attention From Theory to Practice in Philosophy of Biology.
[Preprint]
Waters, C. Kenneth
(2018)
Ask Not "What is an Individual?".
[Preprint]
Weber, Marcel
(2017)
Causal Selection vs Causal Parity in Biology: Relevant Counterfactuals and Biologically Normal Interventions.
[Preprint]
Weber, Marcel
(2018)
Causal Specificity, Biological Possibility and Non-parity about Genetic Causes.
In: UNSPECIFIED.
Weber, Marcel
(2006)
The Central Dogma as a Thesis of Causal Specificity.
Studies in History and Philosophy of the Life Sciences, 28.
pp. 595-610.
Weber, Marcel
(2022)
Coherent Causal Control: A New Distinction within Causality.
[Preprint]
Weber, Marcel
(2017)
Discussion Note: Which Kind of Causal Specificity Matters Biologically?
Philosophy of Science, 84.
pp. 574-585.
Weber, Marcel
(2022)
The Reduction of Classical Experimental Embryology to Molecular Developmental Biology: A Tale of Three Sciences.
[Preprint]
Weber, Marcel
(1998)
Representing Genes: Classical Mapping Techniques
and the Growth of Genetical Knowledge.
Studies in History and Philosophy of Biological and Biomedical Sciences, 29 (2).
pp. 295-315.
ISSN 1369-8486
Werndl, Charlotte
(2012)
Do Microbes Question Standard Thinking in the Philosophy of Biology? Critical Notice of John Dupré "Processes of Life – Essays in the Philosophy of Biology".
[Preprint]
Wieber, Frederic
(2009)
Theoretical technologies in an “experimental” setting: empirical modeling of proteinic objects and simulation of their dynamics within scientific collaborations around a supercomputer.
In: UNSPECIFIED.
Wiener, Gerald
(2021)
The need for food: the history of the Animal Breeding Research Organisation, before Dolly.
[Preprint]
Wilkins, John S.
(2009)
A deflationary account of information in biology.
UNSPECIFIED.
Winning, Jason
(2020)
Internal Perspectivalism: The Solution to Generality Problems About Proper Function and Natural Norms.
Biology & Philosophy.
ISSN 1572-8404
Woodward, James
(2013)
Mechanistic Explanation:Its Scope and Limits.
Aristotelian Society Supplementary Volume, 87 (1).
pp. 39-65.
Woodward, James
(2021)
Causation and Mechanisms in Biology.
[Preprint]
Y
Yeh, Hsiao-Fan and Chen, Ruey-Lin
(2018)
Intervention as both Test and Exploration: Reexamining the PaJaMo Experiment based on Aims and Modes of Interventions.
[Preprint]
Yeh, Hsiao-Fan and Chen, Ruey-Lin
(2018)
Intervention as both Test and Exploration: Reexamining the PaJaMo Experiment based on Aims and Modes of Interventions.
In: UNSPECIFIED.
Z
Zach, Martin
(2022)
Revisiting abstraction and idealization: How not to criticize mechanistic explanation in molecular biology.
[Preprint]
Zach, Martin and Greslehner, Gregor P.
(2023)
Understanding immunity: an alternative framework beyond defense and strength.
Biology & Philosophy, 38 (1).
ISSN 1572-8404
Å
Ågren, J. Arvid
(2018)
The Hamiltonian view of social evolution.
[Preprint]
This list was generated on Thu Dec 19 07:56:16 2024 EST.